Thursday, August 29, 2013

Earth Systems


Can you imagine a green Sahara? How about primordial life forms in the Great Lakes? What was our planet's surface like about three billion years ago? These are some of the questions addressed in this series.
We live on a dynamic planet, both at its surface and deep within. Interactions among Earth's tectonic plates create the major features of our planet's surface, such as deep-sea trenches, volcanic chains, and majestic mountains. Interactions between rock, water, and the atmosphere modify these features, and create the diverse and beautiful surficial environments and processes of our planet. Tectonic processes are mainly driven by Earth's internal heat, while surficial processes are fueled by the energy we receive from our sun.
We will focus on various surface environments and their relationship with climate — from pristine glaciers to dusty deserts, coastal dunes, rivers, and even the seascapes far below the oceans' surface. We will also explore how we — humans — are impacting our climate and natural environments, and some potential consequences of those impacts, such as sea level rise, ocean acidification, and groundwater contamination.
Some view climate change as one of the biggest societal and global challenges of our time. The Earth sciences bring a unique perspective to this issue because of the vast length and environmental diversity of Earth's history. That historical perspective — what geologists call the "paleo"-perspective — provides us with invaluable information about the amplitude and geographic extent of climatic and environmental change over geological time. We can thus compare natural changes with anthropogenic (human caused) ones. The articles in this series will go as far deep in time as the Archean(spanning between about 3.9 to 2.5 billion years ago). We will explore consequences of climate change on glacial-interglacial timescales (over tens of thousands of years), and even what paleo-climatologists call "abrupt climate change," which involves changes over centuries to millennia, with specific focus on ocean circulation and El Niño-La Niña events. We will also investigate both natural and human influences on ocean coral reef communities, vast methane ice deposits, and ocean life and productivity.

Environmental Ethics


What responsibilities do we have to wild species and ecosystems — and to present and future generations of humans dependent on critical ecological services? How does the recognition of rapid, global environmental change challenge our traditional understandings of these obligations? What does it mean to be "sustainable" and why do many believe that achieving sustainability is an ethical imperative for science and society in this century?
These questions, and others like them, are explored in this series. Environmental ethics is a branch of applied philosophy that studies the conceptual foundations of environmental values as well as more concrete issues surrounding societal attitudes, actions, and policies to protect and sustain biodiversity and ecological systems. As we will see, there are many different environmental ethics one could hold, running the gamut from human-centered (or "anthropocentric") views to more nature-centered (or "non-anthropocentric") perspectives. Non-anthropocentrists argue for the promotion of nature's intrinsic, rather than instrumental or use value to humans. For some ethicists and scientists, this attitude of respecting species and ecosystems for their own sakes is a consequence of embracing an ecological worldview; it flows out of an understanding of the structure and function of ecological and evolutionary systems and processes. We will consider how newer scientific fields devoted to environmental protection such as conservation biology and sustainability science are thus often described as "normative" sciences that carry a commitment to the protection of species and ecosystems; again, either because of their intrinsic value or for their contribution to human wellbeing over the long run.
The relationship between environmental ethics and the environmental sciences, however, is a complex and often contested one. For example, debates over whether ecologists and conservation biologists should also be advocates for environmental protection — a role that goes beyond the traditional profile of the "objective" scientist — have received much attention in these fields. Likewise, we will see that issues such as the place of animal welfare concerns in wildlife management, the valuation and control of non-native species, and the adoption of a more interventionist approach to conservation and ecological protection (including proposals to relocate wild species and to geoengineer earth systems to avoid the worst effects of global climate change) frequently divide environmental scientists and conservationists. This split often has as much to do with different ethical convictions and values regarding our responsibility to species and ecosystems as it does with scientific disagreements over the interpretation of data or the predicted outcomes of societal actions and policies.
The essays in this series illustrate the diversity of environmental ethics, both as a field of study and as a broader, value-based perspective on a complex web of issues at the junction of science and society. To gain a fuller understanding of the concepts and arguments of environmental ethics, begin with this introductory overview. From here you can explore a range of topics and questions that highlight the intersection of environmental ethics, ecology, and conservation science.

Genetics


Half of your DNA is determined by your mother's side, and half is by your father. So, say, if you seem to look exactly like your mother, and had gotten all phenotypes from her, perhaps some DNA that codes for your body and how your organs run was copied from your father's genetic makeup.
So close, yet so far. This quote, taken from a high school student's submission in a national essay contest, represents just one of countless misconceptions many people have about the basic nature of heredity and how our bodies read the instructions stored in our genetic material (Shaw et al. 2008). Although it is true that half of our genome is inherited from our mother and half from our father, it is certainly not the case that only some of our cells receive instructions from only some of our DNA. Rather, every diploid, nucleated cell in our body contains a full complement of chromosomes, and our specific cellular phenotypes are the result of complex patterns of gene expression and regulation.

In fact, it is through this dynamic regulation of gene expression that organismal complexity is determined. For example, when the first draft of the human genome was published in 2003, scientists were surprised to find that sequence analysis revealed only around 25,000 genes, instead of the 50,000 to 100,000 genes originally hypothesized. Clues from studies examining thegenomic structure of a variety of organisms suggest that much of human uniqueness lies not in our number of genes, but instead in our regulatory control over when and where certain genes are expressed.

Additional examination of different organisms has revealed that all genomes are more complex and dynamic than previously thought. Thus, the central dogma proposed by Francis Crick as early as 1958 — that DNA encodes RNA, which is translated into protein — is now considered overly simplistic. Today, scientists know that beyond the three types of RNA that make the central dogma possible (mRNA, tRNA, and rRNA), there are many additional varieties of functional RNA within cells, many of which serve a number of known (and unknown) functions, including regulation of gene expression. Understanding how thestructure of these and other nucleic acids belies their function at both the macroscopic and microscopic levels, and discovering how that understanding can be manipulated, is the essence of where genetics and molecular biology converge.

Detailed comparative analysis of different organisms' genomes has also shed light on the genetics of evolutionary history. Using molecular approaches, information about mutation rates, and other tools, scientists continue to add more detail to phylogenetic trees, which tell us about the relationships between the marvelous variety of organisms that have existed throughout the planet's history. Examining how different processes shape populations through the culling or maintenance of deleterious or beneficial alleles lies at the heart of the field of population genetics.

Within a population, beneficial alleles are typically maintained through positive natural selection, while alleles that compromise fitness are often removed via negative selection. Some detrimental alleles may remain, however, and a number of these alleles are associated with disease. Many common human diseases, such as asthma, cardiovascular disease, and various forms of cancer, are complex-in other words, they arise from the interaction between multiple alleles at different genetic loci with cues from the environment. Other diseases, which are significantly less prevalent, are inherited. For instance, phenylketonuria (PKU) was the first disease shown to have a recessive pattern of inheritance. Other conditions, like Huntington's disease, are associated with dominant alleles, while still other disorders are sex-linked-a concept that was first identified through studies involving mutations in the common fruit fly. Still other diseases, like Down syndrome, are linked to chromosomal aberrations that can be identified through cytogenetic techniques that examine chromosome structure and number.

Our understanding in all these fields has blossomed in recent years. Thanks to the merger of molecular biology techniques with improved knowledge of genetics, scientists are now able to create transgenic organisms that have specific characters, test embryos for a variety of traits in vitro, and develop all manner of diagnostic tests capable of identifying individuals at risk for particular disorders. This interplay between genetics and society makes it crucial for all of us to grasp the science behind these techniques in order to better inform our decisions at the doctor, at the grocery store, and at home.

As we seek to cultivate this understanding of modern genetics, it is critical to remember that the misconceptions expressed in the aforementioned essay are the same ones that many individuals carry with them. Thus, when working together, faculty and students need to explore not only what we know about genetics, but also what data and evidence support these claims. Only when we are equipped with the ability to reach our own conclusions will our misconceptions be altered. Scitable brings us one step closer to that outcome.

Monday, August 26, 2013

Aurora


Swirling Aurora


The sky over Yellowknife, Northwest Territories, Canada, churns with light from an aurora borealis.


Yellowknife Aurora


Light from an aurora borealis swirls over Yellowknife, the capital of Canada's Northwest Territories.


Aurora Borealis, Manitoba, Canada


The northern lights turn the night sky an otherworldly green above Wapusk National Park in Manitoba, Canada.


Yellow-Green Aurora


An aurora borealis sends ribbons of yellow-green light through the sky over northern Canada.


Ghostly Aurora Borealis


The aurora borealis illuminates the heavens with ghostly patterns.


Northern Lights, Churchill, Canada


The northern lights arch above the treeline in Churchill, Manitoba, Canada.


Aurora Borealis, Northwest Territories


A subdued aurora fills the sky above the Mackenzie River in Canada’s Northwest Territories.


Northern Lights, Canada


Luminous green flames from the aurora borealis flicker in the Canadian sky.


Aurora Borealis


The northern lights spotlight evergreens in Canada.


Northern Lights, Manitoba, Canada


The aurora borealis forms a green curtain above Wapusk National Park in Manitoba, Canada.


North Pole Aurora


An emerald green aurora borealis veils the sky over the North Pole.


Aurora Borealis, Svalbard

I was visiting Longyearbyen, Svalbard, way up over the Arctic Circle, when I decided one clear night to go out and photograph the stars. After I made it to the location I'd chosen and had set up my exposure, the most beautiful aurora borealis show I've ever witnessed happened right overhead. The full moon at the time helped brighten up the foreground, creating this image.


Waterfall, Iceland -WaterFalls- :-)

This is an image I have had on my mind to get for three years. To align the waterfall and northern lights that are strong enough to light up the whole surroundings. At last it happened and I was at the right place at the right time. Godafoss means Waterfall of the Gods and takes its name from the old Nordic sagas.



Landscapes Part I


Iliamna Volcano, Alaska

Clouds scrape by the snow-covered Iliamna Volcano, which last erupted before Europeans settled in the area.


Abruzzo, Italy

Wildflowers in the morning sun in the mountains of Abruzzo , Italy.


Waves, Iceland

This is a one-second exposure of the trails left by a crashing wave over small icebergs on Jökulsárlón beach; I think it looks a bit like an octopus.


Brandywine River, Delaware

The Brandywine River powered American industry in the 19th century. Walker's textile mill joins many others that dot the riverbanks. Upstream, the DuPont Company made gunpowder; other mills produced everything from paper to snuff.


Alatna River Valley, Gates of the Arctic

Alatna River Valley, August 19, 2010
"I paddled across this deep, slow-moving river in my small pack raft," says adventurer Andrew Skurka. The Alatna meanders south from the Gates of the Arctic National Park.



Godafoss, Iceland

A glacial torrent pours over a 40-foot-high ledge at Gođafoss, "waterfall of the gods." After the Icelandic assembly adopted Christianity in 1000, its leader threw his pagan idols into the falls. The mossy island, notes geographer Guđrún Gísladóttir, "is protected from sheep."


Salar de Uyuni, Bolivia -How to walk on Clouds- :-)

On the eastern margin of Salar de Uyuni in Bolivia , expedition cars attempt to cross the flats after flooding from heavy March rains.


Blue Pond, Hokkaido

The “blue pond” of the famous tourist resort in Biei, Hokkaido, Japan is a place where many tourists gather in spring, summer, and autumn. However, since this pond freezes in winter, nobody is there during that period. This photograph was taken during the first snow of the season as it fell over the blue pond.


Landscape, Czech Republic

The color and texture of the evenly planted rows make me think of an iridescent fabric, like taffeta or velvet. This is appealing in itself, but it’s the tiny figures of the deer that make the shot and give the eye a place to rest.


Rice Terraces, China

A farmer is beginning his day, walking along the rice terraces at dawn.


Mount Errigal, Ireland

While en route to another photo assignment I was drawn to this perfect reflection of Mount Errigal in the clear still water of Dunlewey Lough. I quickly set up my tripod and worked on getting this composition using the small bushes to break up the foreground. Mount Errigal is in County Donegal, Ireland.